It is important to realize that the phase shifts themselves are not observables. The measurable scattering quantity is the cross section, or the differential cross section. The partial wave phase shifts can be thought of as a parameterization of the (experimental) cross sections. The phase shifts provide insights into the physics of partial wave projected nuclear interactions, and are thus important quantities to know.
The nucleon-nucleon differential cross section have been measured at almost all energies up to the pion production threshold (290 MeV in the Lab frame), and this experimental data base is what provides us with the constraints on our nuclear interaction models. In order to pin down the unknown coupling constants of the theory, a statistical optimization with respect to cross sections need to be carried out. This is how we constrain the nucleon-nucleon interaction in practice!